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Amazon forests are characterized by rich structural diversity. However, the influence of factors such as topography, soil attributes, and external disturbances on structural variability is not always well characterized, and traditional structural metrics may be inadequate to capture this type of complexity. While LiDAR offers expanded structural insights, traditional parameters used in LiDAR analysis, such as mean or maximum canopy height, are not always well directly linked to environmental variables like topography. Emerging approaches merge LiDAR with machine learning to uncover deeper structural complexities. However, work to date may fail to fully utilize the potential of fine-scale LiDAR information. Here we introduce a novel approach, leveraging 2D point cloud images derived from a profiling canopy LiDAR (PCL). The technique targets intricate details within LiDAR point clouds by using deep learning algorithms. With a dataset from the Central Amazon comprising 18 multitemporal transects of 450 m in length, our objective was to detect structural "fingerprints" of varied topographical types along a hillslope, comprising: Riparian, White-sand, and Plateau, and to detect any gradient of structural shifts based on terrain variations here represented by the height above the nearest drainage (HAND). The dataset was trained and tested using a leave-one-group-out approach (LOGO) in which, for each iteration, a complete 450 m multitemporal transect was excluded from training and tested after each iteration. The fast.ai platform and a ResNet-34 architecture, coupled with transfer learning, were used to perform a classification to distinguish between three topographical types. Furthermore, a hybrid model combining a Convolutional Autoencoder, and Partial Least Square (PLS) regression was designed to detect forest structural gradient correlations with HAND variation. Cross-validation achieved a promising high weighted F1 score of 0.83 to classify forests based on the topographical types. Additionally, a combined Convolutional Autoencoder and PLS regression revealed a strong correlation (R2 = 0.76) between actual and predicted HAND. Innovatively combining deep learning with ground-based PCL LiDAR, our study revealed unique Amazon Forest structures connected to topographic variation. Our findings underscore the transformative potential of such integrative approaches for investigating forest dynamics and promise a powerful new tool for understanding climate-related forest structure change.more » « less
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TropiRoot 1.0 is a new tropical root database with root characteristics across environment gradients. It has data extracted from 104 new sources, resulting in more than 8000 rows of data (either species or community data). Most of the data in TropiRoot 1.0 includes root characteristics such as root biomass, morphology, root dynamics, mass fraction, architecture, anatomy, physiology and root chemistry. This initiative represents an approximately 30% increase in the currently available data for tropical roots in the Fine Root Ecology Database (FRED). TropiRoot 1.0, contains root characteristics from 25 different countries where seven are located in Asia, six in South America, five in Central America and the Caribbean, four in Africa, two in North America, and 1 in Oceania. Due to the volume of data, when ancillary data was available, including soil data, these data was either extracted and included in the database or their availability was recorded in an additional column. Multiple contributors checked the entries for outliers during the collation process to ensure data quality. For text-based observations, we examined all cells to ensure that their content relates to their specific categories. For numerical observations, we ordered each numerical value from least to greatest and plotted the values, checking apparent outliers against the data in their respective sources and correcting or removing incorrect or impossible values. Some data (soil and aboveground) have different columns for the same variable presented in different units, including originally published units, but root characteristics data had units converted to match the ones reported in FRED. By filling a gap from global databases, TropiRoot 1.0 expands our knowledge of otherwise so far underrepresented regions, and our ability to assess global trends. This advancement can be used to improve tropical forest representation in vegetation models.more » « less
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